rs258500777 SNP Detail

Summary

• ID
  rs258500777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7867664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCAAAAG CACTAATGGT
  ATGCCTGAAT AAAACTAATC TAGTCCAGTT TTTTTCTTTA AGACTTAGTA GATCTTTACT
  ATGTCTAAGA ACACTAGACA GTATCAGAAC TAGCGCTGGT AGACATTTAA GTAACAAAAT
  CACTAAGACA AGCACAAGAA CTGAGAAAAC CATGGCACTA CATATATTGT TTAAGGGGCA
  R
  TTTACAGTAT GAGACATCAA CTAATGAGGC AGACATTGTT GTCAGGTATG TCATTCTCAC
  ATCTGTGTAC ATTGGGTGCA TGCTGATGTG GGGGTGACAA ATGAATTTTA CTGTGTAAGT
  TTGCAAACAC AATATTGAGT ATCACTCCTA CATCTTGAAC ATTTCCTCCT TTAGCTCAGC
  CCTGTGTTAC CTCACCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399628966	MGP_WTSI_18_7867662	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258500777					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399628966	MGP_WTSI_18_7867662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7867664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	772 bp proximal
Gm9993	predicted gene 9993	354 bp downstream
Rr405554	regulatory region 405554	1303 bp upstream
Rr533616	regulatory region 533616	678 bp proximal
Rr533617	regulatory region 533617	1439 bp proximal
Rr533618	regulatory region 533618	1848 bp proximal
Tssr149978	transcription start site region 149978	809 bp upstream
Tssr149979	transcription start site region 149979	1159 bp upstream
Tssr149980	transcription start site region 149980	1213 bp upstream
Tssr149981	transcription start site region 149981	1475 bp upstream
Tssr149982	transcription start site region 149982	1495 bp upstream
Tssr149983	transcription start site region 149983	1550 bp upstream
Tssr149984	transcription start site region 149984	1643 bp upstream
Tssr149985	transcription start site region 149985	1678 bp upstream
Tssr152379	transcription start site region 152379	1397 bp downstream
Wac	WW domain containing adaptor with coiled-coil	1168 bp upstream