rs258505144 SNP Detail

Summary

• ID
  rs258505144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74318610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTGGGGG CCCTATGTGG CCACATTGCT
  CCTGTCAGTC TTGGCCTATG AGCGTCGCCC ACCACTAGGG CCTGGAACTC TGTTATCGCT
  CATCTCATTG GGCAGCACCA GTGCTGCCGC TGTGCCTGTG GCCATGGGGC TGGGTGATCA
  R
  CGCTACACAG CCCCCTGGAG GACAGCTGCC CAAAGGTGTC TACGAGTGCT TCGAGGAAGA
  GCCAAGAGGG ACAATCCAGG CCCCAGCACT GCCTACCACA CCAGTAGCCA ATGCAGCATT
  GACCTGGACT TGAATTAGGG AAGCAGCAGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319794419	CHEV_1_74326025	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258505144					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74318610 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	389 bp downstream
Gm28364	predicted gene 28364	1710 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	within coordinates
Rr17376	regulatory region 17376	within coordinates
Tssr7371	transcription start site region 7371	1705 bp upstream
Tssr7372	transcription start site region 7372	1731 bp upstream
Tssr7373	transcription start site region 7373	1763 bp upstream
Tssr7374	transcription start site region 7374	1774 bp upstream
Tssr12291	transcription start site region 12291	1661 bp downstream