rs258505688 SNP Detail

Summary

• ID
  rs258505688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGACAGC CTGCAGGGCA
  AGCGACAGCA TGGGGTCTGC ATTTATTACT GTTTTACAGG AGATGGAGCA CAAGTACTTG
  TGCTTGCCAG GCAAGAACTT TTTTTTTTTT TTTTTTTTTA ATGTCAGGCT ATAAACCATT
  CTTAGTGCTC AATGGCTTCT GGACACTGAG CATAGAAAGA GCCACTTGCT CTTTGCCCCA
  R
  TGTCACAGGC AGGGCTGAGC AGCTAGGCCA GGTCTGTGGT GCTGATCTAG GACAGCATCT
  TCAGGGCAGC AGGCAGGAAC TTGTAACAAC TAAGCTCCCC ACTTCCTCTT CACTGCTTCC
  CGTAATTCCA TCCCATCCCT TCCCTTCCAG TATTGCATCA GGTGACCAGC TTTCTTTTTT
  CTTTTTTCTT TTTTTTAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372622524	MGP_WTSI_7_112790934	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258505688					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372622524	MGP_WTSI_7_112790934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19541	CpG island 19541			1199 bp distal
Gm22504	predicted gene, 22504			Noncoding-Transcript-Variant
Gm45799	predicted gene 45799			Intron
Rr400513	regulatory region 400513			1872 bp downstream
Rr652795	regulatory region 652795			1820 bp distal
Rr652796	regulatory region 652796			1981 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr2358	transcription start site region 2358			1999 bp downstream
Tssr68382	transcription start site region 68382			1906 bp downstream
Tssr68383	transcription start site region 68383			1834 bp downstream
Tssr68384	transcription start site region 68384			1611 bp downstream
Tssr68385	transcription start site region 68385			1393 bp downstream
Tssr68386	transcription start site region 68386			1350 bp downstream
Tssr68387	transcription start site region 68387			78 bp downstream
Tssr68388	transcription start site region 68388			195 bp upstream