rs258510232 SNP Detail

Summary

• ID
  rs258510232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAAAATT AAACAAAAGC
  TAGAGGCACC TCTATCCGTC CTTCCCAAGG GGTCAGACCT GCAGGTCTCT GAGGTGTGGC
  ACCGGTTTGT TTTTCCTGGT CTTTATAGCA GGGGTGGGTG GGTATGGGGT GCTCTCTGCA
  CAAAGAAGGA ATCCTAAGGT AGGCTAGCAC TCTAGTGAAG TCTTCACCTT GAACTTCCTG
  Y
  CAATCCTTGG AGGGATCAAG GCCGGGAAAA TGCTACTTGA TTCTGCGTGT CGTGAGGTTG
  CAGCGGGAGT GGGGGAGAGG GAGGGGGCAG AACCTGTCAT CTCTCTTCCA ATTCTGAGAC
  CGAGGTCTCC TTGTGTCCCT GGGAGACCAG AACCTCAAAG GGTGATCGAT TAAGACAACT
  GTGAACCCGG ATAATGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402836612	MGP_WTSI_19_55327634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	C	C	T	T	C	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258510232					SNP	C	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	C	T	C	C	T	T	T	T	C	C	T	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402836612	MGP_WTSI_19_55327634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241576 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	871 bp proximal
Rr363563	regulatory region 363563	375 bp distal
Rr363564	regulatory region 363564	within coordinates
Rr370538	regulatory region 370538	740 bp upstream
Rr406037	regulatory region 406037	1491 bp upstream
Tssr5558	transcription start site region 5558	1301 bp downstream
Tssr157068	transcription start site region 157068	1241 bp downstream
Tssr157069	transcription start site region 157069	1200 bp downstream
Tssr157070	transcription start site region 157070	1181 bp downstream
Tssr157071	transcription start site region 157071	497 bp upstream
Tssr157072	transcription start site region 157072	549 bp upstream
Tssr157073	transcription start site region 157073	756 bp upstream
Tssr157074	transcription start site region 157074	822 bp upstream
Tssr157075	transcription start site region 157075	837 bp upstream