rs258524355 SNP Detail

Summary

• ID
  rs258524355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29774395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCGCGC ACGTTCACGG
  GACCGCGCGC GCAGTGCGGG CGGTCACCAT CTTGGTACCT ACGGCAGCGC GGTGCAGGCG
  CGAGTCGGGG CGTCCCTCGC TTGACGGTGG CGCGCTGTGG ATAAATAAGC AGCGGGGACA
  GGCCGGCCTC CAGCGTCGCC GCGCTCGCGC CCGCGTGCAG GGCGGAGAGC GCTGAGCCTC
  R
  GGGGGGGCGG CGCGGGACAG CGAGGCCGCG ACCCTGCCGG GCCCCGCCCA GCCCGCCGGG
  CCCGCCCCCG GCCGCTCCGC TGCCTGCCGG GCCGCGCAGA TGGGATAAGC GGCGAAGATG
  TTCAGCTTCG AAGGCGACTT CAAGACAAGG CCCAAAGTGT CTCTCGGTGG CGCGAGCAGG
  AAGGTGAGGC GGTGCGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss364404802	MGP_WTSI_5_29895937	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258524355					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364404802	MGP_WTSI_5_29895937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29774395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15669	CpG island 15669	within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Gm71580	predicted gene, 71580	279 bp upstream
Rr124981	regulatory region 124981	within coordinates
Rr399012	regulatory region 399012	134 bp downstream
Tssr45535	transcription start site region 45535	130 bp downstream
Tssr45536	transcription start site region 45536	43 bp downstream
Tssr45537	transcription start site region 45537	41 bp upstream
Tssr45538	transcription start site region 45538	52 bp upstream
Tssr45539	transcription start site region 45539	66 bp upstream
Tssr45540	transcription start site region 45540	93 bp upstream
Tssr45541	transcription start site region 45541	423 bp upstream
Tssr45542	transcription start site region 45542	441 bp upstream
Ube3c	ubiquitin protein ligase E3C	within coordinates