rs258529386 SNP Detail

Summary

• ID
  rs258529386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145809226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCGCCGC GCGCCTCCAG
  CTTCGGCCTC TTGGGCGCAG GCGACGAGTC CCCGGGTGGC TCCTGCTTGA CGGCCGCGCG
  GCCCTGCTCC GCCTCGCCTC CGTAGCCGCT GTCGGTGTCC GTGTCGTGTT CCGGCTCCGT
  GCCGGGCTGA GTCCGCTGGA TGACCGGCAC GCAGCGGGCG ACGCGCTCGG GACCCGAGGC
  S
  GCCGCAGCCC CCGCGCTGCA GGGCGCGCGC CCAGAGCCCC TGCCGGAGGG CACCTGTGGC
  GTCAGGAGCT GGGTGGCCAC GGCATGCAGG TGGCTGACGA GCTGTGCGCA GCGCGGCTCC
  CTGGGTGTCC AGCTCTCAAA GCGCGCGAGG TATTGCAAGA CTTCTTTGGC GCAGGTTTGA
  AACCCCGAGT GGAACGCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370464773	MGP_WTSI_6_145812020	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258529386					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370464773	MGP_WTSI_6_145812020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145809226 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	within coordinates
Cpgi18162	CpG island 18162	within coordinates
Cpgi18163	CpG island 18163	1636 bp proximal
Gm43909	predicted gene, 43909	within coordinates
Gm67122	predicted gene, 67122	within coordinates
Gm67128	predicted gene, 67128	381 bp upstream
Rr641233	regulatory region 641233	623 bp distal
Rr641234	regulatory region 641234	517 bp distal
Rr641235	regulatory region 641235	within coordinates
Rr641236	regulatory region 641236	533 bp proximal
Rr641237	regulatory region 641237	1792 bp proximal
Tssr59561	transcription start site region 59561	736 bp downstream
Tssr59562	transcription start site region 59562	344 bp upstream
Tssr64073	transcription start site region 64073	1481 bp upstream
Tssr64074	transcription start site region 64074	1276 bp upstream
Tssr64075	transcription start site region 64075	1066 bp upstream
Tssr64076	transcription start site region 64076	820 bp upstream
Tssr64077	transcription start site region 64077	673 bp upstream
Tssr64078	transcription start site region 64078	316 bp upstream
Tssr64079	transcription start site region 64079	249 bp upstream
Tssr64080	transcription start site region 64080	99 bp downstream
Tssr64081	transcription start site region 64081	120 bp downstream
Tssr64082	transcription start site region 64082	144 bp downstream
Tssr64083	transcription start site region 64083	171 bp downstream
Tssr64084	transcription start site region 64084	317 bp downstream
Tssr64085	transcription start site region 64085	1188 bp downstream
Tssr64086	transcription start site region 64086	1387 bp downstream
Tssr64087	transcription start site region 64087	1835 bp downstream
Tssr64088	transcription start site region 64088	1871 bp downstream
Tssr64089	transcription start site region 64089	1885 bp downstream
Tssr64090	transcription start site region 64090	1932 bp downstream
Tssr64091	transcription start site region 64091	1944 bp downstream
Tssr64092	transcription start site region 64092	1983 bp downstream