rs258538012 SNP Detail

Summary

• ID
  rs258538012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178166655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAATT ATGATTTGTT
  TTCTGGCATT AAATATGTTG TGTTCTTGAA ACTTTTATAT AGAATTTAAT TTCTACACTG
  GGGCCTTCCT GTGTAGATTG CACCCAAGCT ATGCTTGGTG GTACATGTGT ATAATTTCAA
  CACTTGGGAG ATACAGGTAA GATGATCAAG AATTCAGTGT CAGCCAGGCA GGCAGTGGTG
  R
  CACCCAAGTT TGGCTCCAGC GCTCAGGAAG CAGAGGCACC CCACCCACCC ACCCCCATCC
  CCTCACCCCC ACCCCCACCC TGTCTATGAA GCCAGTTCCA GGACAGCCAG AGCTACACAA
  AGAAACCCTG TCTCAAGCTA AGCAACTAAG CAACTCAGTC AATAAAATTC ATTGTCATCC
  TTGGCTACAA AAGTTCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535492	MGP_WTSI_1_180269221	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258538012					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535492	MGP_WTSI_1_180269221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178166655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	1006 bp distal
Gm38300	predicted gene, 38300	511 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	1293 bp upstream
Rr20721	regulatory region 20721	1946 bp proximal
Rr29068	regulatory region 29068	254 bp distal
Rr372516	regulatory region 372516	160 bp downstream
Tssr317	transcription start site region 317	1499 bp upstream
Tssr318	transcription start site region 318	1274 bp upstream
Tssr10387	transcription start site region 10387	1912 bp downstream
Tssr10388	transcription start site region 10388	1774 bp downstream
Tssr10389	transcription start site region 10389	1188 bp downstream
Tssr10390	transcription start site region 10390	1103 bp downstream
Tssr10391	transcription start site region 10391	892 bp downstream
Tssr15484	transcription start site region 15484	1972 bp upstream
Tssr15485	transcription start site region 15485	1918 bp upstream
Tssr15486	transcription start site region 15486	1837 bp upstream
Tssr15487	transcription start site region 15487	1771 bp upstream
Tssr15488	transcription start site region 15488	1438 bp upstream
Tssr15489	transcription start site region 15489	1396 bp upstream
Tssr15490	transcription start site region 15490	1357 bp upstream
Tssr15491	transcription start site region 15491	1329 bp upstream
Tssr15492	transcription start site region 15492	1296 bp upstream