rs258545268 SNP Detail

Summary

• ID
  rs258545268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32000306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCAGGA GGCAGAGGCA
  GGCGGATTTC TGATTTCGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG
  CTACACAGAG AAACCCTGTC TCGAAAAACA AAAAAACAAA ACAAACAAAC AAAAAAAAAC
  CCAAAAATAT TTTTTCCATC CATGAGTGGT TGAATCTGTG GATGCGGAAT CCTTAAACAC
  R
  CAGGGCCAAT TGTATGTGCA CTCGATAGGA TAACAGCTCA CCATTAAAAG GACAGAGTGA
  GGACTGGGCA GGTGGCTCAG TAAGAGCGTT TGCTGTGCAG GCGTGAGGTC TCTGTTCAGA
  TCCCTGATAC CCAAATGAAA GCAAGGCACT GTGGAGCGGT AATTCTGGTG CAAGAAAGGC
  AGAGCCGGAT CTCCGGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395853987	MGP_WTSI_16_32181574	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258545268					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395853987	MGP_WTSI_16_32181574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32000306 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	Intron
Rr514654	regulatory region 514654	1221 bp proximal
Rr514655	regulatory region 514655	1379 bp proximal
Tssr137951	transcription start site region 137951	1700 bp downstream
Tssr137952	transcription start site region 137952	1653 bp downstream
Tssr137953	transcription start site region 137953	1638 bp downstream
Tssr137954	transcription start site region 137954	1631 bp downstream
Tssr140795	transcription start site region 140795	1902 bp upstream
Tssr140796	transcription start site region 140796	1880 bp upstream
Tssr140797	transcription start site region 140797	1851 bp upstream
Tssr140798	transcription start site region 140798	1800 bp upstream