rs258548569 SNP Detail

Summary

• ID
  rs258548569
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGCTCAA GATGGTCATG
  TCAAGGTGAA TTTATAAAGA ATACTGTAAA TACTACTAAC TAAAGGGCAA AATAGGGCAT
  CAGTTTTCTT TGGAATTGGA ATTATAGATA GTTTGAGCTG CCATCTAAGT GGGAATTGAA
  CCCAGGTCCT CTGGAAGAGC AGCAGGTGCT CTTAACCACC AAGCCATCTC TCCAGACCTT
  K
  CCCATTTATC TCAATCAAAT ATTATGTGTA GTCATTGAGG TCAGCTTCAG ACCTTCCAGG
  CATCTGAGTT TTCAGATGAC TGGGGTTGGC ACAGACAAGT TTCCCCTCTG TGACAAAGCC
  AGATATGCCA CTTTAAAGTG GAACAGAAAA AAAAAATGTT TATATACCTA TAAAAATAAA
  CACTTAGAGC CACTTAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072517	MGP_WTSI_11_83388625	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258548569					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072517	MGP_WTSI_11_83388625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465949 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	443 bp downstream
Tssr103715	transcription start site region 103715	393 bp downstream
Tssr103716	transcription start site region 103716	227 bp upstream
Tssr109677	transcription start site region 109677	1439 bp upstream
Tssr109678	transcription start site region 109678	1058 bp upstream
Tssr109679	transcription start site region 109679	774 bp upstream
Tssr109680	transcription start site region 109680	523 bp upstream
Tssr109681	transcription start site region 109681	404 bp upstream
Tssr109682	transcription start site region 109682	129 bp upstream
Tssr109683	transcription start site region 109683	81 bp upstream
Tssr109684	transcription start site region 109684	55 bp upstream
Tssr109685	transcription start site region 109685	14 bp upstream
Tssr109686	transcription start site region 109686	42 bp downstream
Tssr109687	transcription start site region 109687	91 bp downstream
Tssr109688	transcription start site region 109688	138 bp downstream
Tssr109689	transcription start site region 109689	181 bp downstream
Tssr109690	transcription start site region 109690	194 bp downstream
Tssr109691	transcription start site region 109691	204 bp downstream
Tssr109692	transcription start site region 109692	235 bp downstream
Tssr109693	transcription start site region 109693	346 bp downstream
Tssr109694	transcription start site region 109694	740 bp downstream
Tssr109695	transcription start site region 109695	790 bp downstream
Tssr109696	transcription start site region 109696	1824 bp downstream