rs258559075 SNP Detail

Summary

• ID
  rs258559075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79889677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTGAGC CGCTTACTTA
  AGCCAGCACT GCTGTGCGGG GCTCTGGCTG CGCCTGGTCT GGCAGGCACC ATGGTGGGCT
  ACTGGGAACT TGGAGGATCG CGGGTGGGGG CGGGGTTCGG AGTCGGGTCA CCGTATCCAG
  GGTGGAGATC AGGGGTCGTG GGATCGGTTA GCTAGAGAAG GGGGCACCCA GGTGGGAAAG
  Y
  GGAGCCTGAT AGGCATCTCC GGGGTTGAAC AAGGCTAGGC CTCGGCGCGG GAGGTCCTTG
  GGCGGTGAGA ACCGGTGTCG GGGTCACCAT AGCGGGCTCT GACCTGGTCA CGCGCCCTGC
  CCGGCCTGGT GCGTCACAGT CGGCGGCGCC TTGGCTACCG GCTCTTTGTC CCCGCGCTGT
  GCTTGGGACG CACAGACCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381013935	MGP_WTSI_10_79516588	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258559075					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381013935	MGP_WTSI_10_79516588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79889677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	within coordinates
Gm65896	predicted gene, 65896	within coordinates
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	857 bp downstream
Rr402035	regulatory region 402035	239 bp downstream
Rr435055	regulatory region 435055	1846 bp distal
Rr435056	regulatory region 435056	1406 bp distal
Rr435057	regulatory region 435057	345 bp distal
Rr435058	regulatory region 435058	127 bp proximal
Rr435059	regulatory region 435059	342 bp proximal
Rr435060	regulatory region 435060	573 bp proximal
Tssr94472	transcription start site region 94472	653 bp downstream
Tssr94473	transcription start site region 94473	273 bp downstream
Tssr94474	transcription start site region 94474	178 bp downstream
Tssr94475	transcription start site region 94475	123 bp upstream
Tssr94476	transcription start site region 94476	154 bp upstream
Tssr94477	transcription start site region 94477	186 bp upstream
Tssr94478	transcription start site region 94478	203 bp upstream
Tssr98381	transcription start site region 98381	429 bp upstream