rs258569636 SNP Detail

Summary

• ID
  rs258569636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76703153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCATGGC CCTTTTAACT
  TCTTATTAAT TTTTTTTAAG AGAGAGAATT TCAGATGGCC CAGGCTGACC TTCAACTTCC
  CTATGTAGCG AAGGATGACT TTGAAACTCT AATCCCGTCT TCATCTCTCT TGTGCGAGGA
  TTACAGGCAC CATATCCGGT TTACACAGCT GAGGAGGTGA AACCCATTCT AGGAAAGCCC
  Y
  TTACCTACTG AGCTACATCC TCAGCTGCCA TTTGGGTTTT TTGTATTTGA CGAGCTCTTG
  CTCTGTGTAC CCGGGCTGGC CTCAAACTTA AAATCCGTCT TTAACACATT ACAAGTGCGT
  TTGTCACCCT CCCAGACTTC GGAATATTCA GTGTTGTTGT TGTTGTTTTT GTTTGTTCAT
  GTTTTCGTTT TTTGAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394621667	MGP_WTSI_15_76649383	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258569636					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394621667	MGP_WTSI_15_76649383	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76703153 () rs orientation: forward

Symbol	Name	Function Class
Arhgap39	Rho GTPase activating protein 39	787 bp upstream
Cpgi7256	CpG island 7256	436 bp distal
Gm41350	predicted gene, 41350	within coordinates
Gm62667	predicted gene, 62667	1707 bp downstream
Rr390937	regulatory region 390937	647 bp upstream
Rr404466	regulatory region 404466	564 bp downstream
Rr504853	regulatory region 504853	968 bp distal
Rr504854	regulatory region 504854	1099 bp distal
Rr504855	regulatory region 504855	681 bp distal
Rr504856	regulatory region 504856	731 bp distal
Rr504857	regulatory region 504857	18 bp distal
Rr504858	regulatory region 504858	590 bp distal
Rr504859	regulatory region 504859	1806 bp proximal
Tssr131826	transcription start site region 131826	659 bp downstream
Tssr135056	transcription start site region 135056	1920 bp upstream
Tssr135057	transcription start site region 135057	779 bp upstream