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rs258576611 SNP Detail
Summary
  • ID
    rs258576611
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:45005419 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCCTTTTTC CTTCCACCTC
    TTTCCTTAAA AAAAAAAAAA AAATCAGAGA CCACCTTCTT CCAAAGTGTG CCGTTAAGCC
    TCCCTTGGAG GAATAGGGAG CCTGTTTTAC GGAGTGACTA TTGGCAAGCC CCTTCTGCAG
    GCACCCAGGT AGCTACTGGA CGTCTTTTTA GTCCAGACAC ACCAGTGCAA AGGCACAATG
    M
    GACTATATGG CAAGTCGAAC AAATAGCTAC AAACCTCTGA CCTTATCATG GATATAAAAT
    ATCTTCTTAC TTCAGATCTG ACAAAATAGA CCATTAACTA TTTCAATTAA AAACACCTAA
    TTATCTGATT ACCTTAGACT CATTCATCTC TCCAGTGCCA AAAGGCGGCC CCCAATAGTT
    AGCACTGAGT TTCGACTTTT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353808072 MGP_WTSI_2_44970927 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258576611 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353808072 MGP_WTSI_2_44970927 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:45005419 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11634 CpG island 11634 1267 bp proximal
Gm56476 predicted gene, 56476 1992 bp downstream
Gm56477 predicted gene, 56477 1423 bp downstream
Rr373117 regulatory region 373117 240 bp upstream
Rr556441 regulatory region 556441 1638 bp distal
Rr556443 regulatory region 556443 399 bp distal
Rr556444 regulatory region 556444 within coordinates
Rr556445 regulatory region 556445 1978 bp proximal
Tssr17636 transcription start site region 17636 1824 bp upstream
Tssr23986 transcription start site region 23986 1480 bp upstream
Tssr23987 transcription start site region 23987 1455 bp upstream
Tssr23988 transcription start site region 23988 1557 bp downstream
Tssr23989 transcription start site region 23989 1894 bp downstream
Tssr23990 transcription start site region 23990 1942 bp downstream
Tssr23991 transcription start site region 23991 1993 bp downstream
Zeb2 zinc finger E-box binding homeobox 2 Intron
Zeb2os zinc finger E-box binding homeobox 2, opposite strand 1320 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory