rs258578887 SNP Detail

Summary

• ID
  rs258578887
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165469206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCTCGG TCCCCTCTGC
  TGGATAGCTT TGTGGAGTGG GGAAATGGTT CAGTGGGTAA AGTGCTATTC ACAAGAGTGA
  GCACCAGAGA TCGGATTCTG GGTGCTCGTA TAAAACTGAG TGAGATGGGG TGTGTTCAGT
  GTGTGAGCCC AGGGCTGAGG TTGGAGACAG GAGGATTCTG GGTGCTCACT GCCAGCCAGC
  M
  CTGCTAATGG ATGAACTCCA GGTTCAAGAA GAGACCCTGA CTCAGACAAG AAAATGGAGG
  AAGATACCAC ATGCTGACCT CTGGCCTCCA TGTACACACA GACACATACA CATCATACAA
  CACACACACA CATATACCAT ACACACACAT ACACCACACA CTACACACAC ACCACATACA
  CATACACTAG ACACACACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608512	CHEV_2_165452786	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258578887					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165469206 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	159 bp distal
Rr569966	regulatory region 569966	662 bp proximal
Rr569967	regulatory region 569967	776 bp proximal