rs258586298 SNP Detail

Summary

• ID
  rs258586298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115080801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTGAAGG AAGAGAGATG
  AGAAAGATGG GTGCTGGTGG CGACAGGGGG GTGTTAATCA GGTGGTGGTC AGGGTTCTGA
  GGAAAGCAGC CCTCTTCTTC TTATAGGTCT TTGTTTTCTT TTAAATATTT AATTTTTGTG
  TGTACAAATG TATGGAATTC ATATATATGT GTATATGTGT ATATAAGCAT GCATATGTGT
  R
  TGTATATATA TATATATACA TTTATACTCA AATGCATAGG TGTGTCTATA TACATATATG
  TACATATATA TACATATACA TGTATATATC ATATGCATGC AGTGCCCTCA GAGGCCAGAA
  GGGGCGTCAT ATCCCCTAGA ACTGGAGCTA TATCTGGTTT TAAACCACCA TGTGGGTGCT
  GTAAACTGAA CCAGGGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384823301	MGP_WTSI_11_115051289	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258586298					SNP	A	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384823301	MGP_WTSI_11_115051289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115080801 () rs orientation: forward

Symbol	Name	Function Class
Rr459796	regulatory region 459796	1700 bp distal
Rr459797	regulatory region 459797	1365 bp distal
Rr459798	regulatory region 459798	941 bp distal
Rr459799	regulatory region 459799	349 bp distal
Tmem104	transmembrane protein 104	within coordinates
Tssr3729	transcription start site region 3729	1295 bp upstream
Tssr3730	transcription start site region 3730	348 bp downstream
Tssr111736	transcription start site region 111736	1201 bp upstream