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rs258600726 SNP Detail
Summary
  • ID
    rs258600726
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:84565280 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTGAATTA GGTTCCTGGG
    ACTCATATGG TAGCACAGAA CTGACTCCAA GTTGTCCTCT GAACTCCCAT GTGTGCTATG
    GTATGTGCTC CTACATACAC ACACACACAC GGACACACAC ACCCCACATA ATGTTAGGAA
    ACTGATGAAG AGGAGGAGGA GGTGGAGGAA GAAGAATCCA GTTCACAGGT GTTTGCAGCA
    R
    GCCTGGCTAA GCTGAGGCCT TGTCCTCTGA AGACCTGTAT CTGGTGGCCG TGCTGAATCA
    ATGTTGAGGA TACAGTATCT TAGTCAGCCC TGCTATTTTC TTTCTTCAGG GTTTATATTT
    ATTTATGTGT ATGTGTGTAT CTTTATGAGA CTCTATCACA TATGCATGCA GGTACGTGTG
    AAGGCCAGAA GAGGGCGTTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358715815 MGP_WTSI_3_84461895 EVA_MGPV3 EVA_MGPV3 f SNP G G G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A A A A A A A A A A A G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258600726 SNP G G G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A A A A A A A A A A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358715815 MGP_WTSI_3_84461895 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:84565280 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37240 predicted gene, 37240 within coordinates
Rr68541 regulatory region 68541 1880 bp distal
Rr68542 regulatory region 68542 121 bp proximal
Rr68543 regulatory region 68543 921 bp proximal
Rr76452 regulatory region 76452 1012 bp proximal
Rr83250 regulatory region 83250 1991 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory