rs258603450 SNP Detail

Summary

• ID
  rs258603450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98331568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCACTCC GGTAGACCCT
  GCTCACTCTG GTCGGCCCGC TTGCTCCAGT CTAAAGATTT ATTTATTATT ATATCTAAGT
  ACACTGTAGC TGTCTTCAGA CACCCCAGAA GAGGGTGTCA GATCTCATTA TGGGTGGTTG
  AGTGCCACCA TGTGGTTGCT AGGATTTGAA CTCAGGACCT TCAGAAGAGC AATCAGTGCT
  Y
  TTAACCACTG AGCCATCTCT CCAGCCCTGA TGATAGTTAT TCTTTTAGGT AATGCAATAG
  GCCATCTTTT CAAGTAGTCA CATTTTTGCT GTTGGTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTGAGACAG GGTTTCTCTA TAGCCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAAGCT
  GGCCTCGAAC TCAGAAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384412124	MGP_WTSI_11_98302056	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258603450					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384412124	MGP_WTSI_11_98302056	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98331568 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3758	CpG island 3758	1547 bp distal
Gm12352	predicted gene 12352	1696 bp downstream
Gm72451	predicted gene, 72451	within coordinates
Mien1	migration and invasion enhancer 1	Intron
Rr402936	regulatory region 402936	1526 bp downstream
Rr456152	regulatory region 456152	1822 bp distal
Rr456153	regulatory region 456153	1387 bp distal
Rr456154	regulatory region 456154	1675 bp distal
Rr456155	regulatory region 456155	1171 bp proximal
Tssr110536	transcription start site region 110536	1966 bp upstream
Tssr110537	transcription start site region 110537	1734 bp upstream