rs258606468 SNP Detail

Summary

• ID
  rs258606468
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77575588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT TTAAATTTTC CCTTGGGGGG
  M
  GGGCAGTGAT GGTGGGGCAT GCCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755518	CHEV_11_77498264	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258606468					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77575588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3317	CpG island 3317	1010 bp proximal
D11Bhm149	DNA segment, Chr 11, Boehm 149	1519 bp distal
D11Bhm150	DNA segment, Chr 11, Boehm 150	1200 bp distal
Gm72230	predicted gene, 72230	within coordinates
Nufip2	nuclear FMR1 interacting protein 2	978 bp upstream
Rr386319	regulatory region 386319	1458 bp upstream
Rr402754	regulatory region 402754	871 bp upstream
Rr451737	regulatory region 451737	903 bp proximal
Rr451738	regulatory region 451738	1733 bp proximal
Tssr103164	transcription start site region 103164	991 bp upstream
Tssr103165	transcription start site region 103165	1370 bp upstream
Tssr103166	transcription start site region 103166	1399 bp upstream
Tssr103167	transcription start site region 103167	1467 bp upstream
Tssr109342	transcription start site region 109342	1216 bp downstream