rs258611866 SNP Detail

Summary

• ID
  rs258611866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156081519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCAAG TGGAAAGGAA
  AGTAAGTGGT CCTAGCATGT TATAATTTCA GATAGAGAAG GGCTGGCCCA GGGCTGCCTA
  GGAAAAGATA TAACAAATCA ATATGTTAAG AGCTGATGGG GGGAAGGGGA CATAGGCTGG
  TCTGTTTGGG TACCTACATT CCCTCCCTCC CTTCCTCCCT CCCTCCCTCC CTTCCTTCCT
  Y
  TCTTTTTCTC TGTGGTAAGA TCTTACTGTG TAGCCCTGGC TGGCCTTGGA CTCACAACTG
  GTCCATCTGC TGCTGCTTGT CTGCTTGCTT GCTTGCTAGC CTGCTTTGTG GATTTTTAGA
  GACATGATCT CTCTATTAAA TAGCCCTGGC TATCCTAGAT TTTAATATGT AGACCAGCAG
  GCCTCTCTCT CTCAAATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444434	CHEV_4_155371171	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258611866					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156081519 () rs orientation: forward

Symbol	Name	Function Class
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	706 bp downstream