rs258625430 SNP Detail

Summary

• ID
  rs258625430
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTATGT AACATCTTTT
  TTTCTTTGTA CTTCTTCACT GGTTTTCAGA CGCCCTCTCC TTCAGTCTGT CATTTGCTTC
  CCTCAGAAGA GTCCCTGGTC CCATAAAATT CTTTACTTGA GCTTCTTGCC AAGTCAGGAC
  TCTTCTTCAG CCATTGCACC CATGAAACAG AGTTCTGCAG TAGCCCTTCA AAGAAGTCAC
  G
  TGGCCCAGCC CTGGTCAGTT GGGTGTTGGT CCATCCAGTG ACATTCTTTT GTGTTACAAG
  ATCCTGAAGA CTCACAATCA ACCTAATGCC CTATCCTGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAAAT TGGTTGGTTG GTTGGTTGGT TGGTTGGTTG GTTGGTTGGT
  TGGTTGGAGA AAGAAGATAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323830617	CHEV_11_99912117	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258625430					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941629 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	74 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	within coordinates
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	within coordinates
Gm11571	predicted gene 11571	1483 bp upstream
Krt31	keratin 31	252 bp upstream
Tssr104894	transcription start site region 104894	1301 bp upstream
Tssr104895	transcription start site region 104895	1457 bp upstream
Tssr104896	transcription start site region 104896	1478 bp upstream
Tssr110726	transcription start site region 110726	246 bp upstream