rs258631341 SNP Detail

Summary

• ID
  rs258631341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53252437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGTGGTT GCCCAGAATT TCCACCTAAG
  GAGAGGGAGG GGCTGCAGGC ACCGGTGCGG ACGTTCAGTT GAAGGCTGCA GAAATCAGTC
  CCCCTCTACT CCGAGTGTCA TTGTGTACAG CTTTGTGACA AATGAGCGGG CTGAGCCGAC
  K
  CCTGAGAATT TTCCGCGTGT CTTTCTGTTT GCAAAGCTTC CCACCCTCTT AAGGTGTTGG
  CTTGGCACGT GATGTGTTCC CTCACTGGCG AACCATTAAG ATTGAGTTGC GGCGCTAAAT
  CAAAGGTGTT GGAGGTCACT GTCCCTGAAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322963148	CHEV_9_53149242	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258631341					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53252437 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Tssr85124	transcription start site region 85124	491 bp downstream
Tssr85125	transcription start site region 85125	57 bp downstream
Tssr85126	transcription start site region 85126	36 bp downstream
Tssr85127	transcription start site region 85127	72 bp upstream
Tssr85128	transcription start site region 85128	90 bp upstream
Tssr85129	transcription start site region 85129	117 bp upstream
Tssr85130	transcription start site region 85130	204 bp upstream
Tssr85131	transcription start site region 85131	669 bp upstream