rs258636801 SNP Detail

Summary

• ID
  rs258636801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27858475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCACATA TCCTTGTCTT
  TCCCTTGCCC CATCCTCAAA CCCATTCTTG TGCTATCCCA ACCCTTTGCA CACACCTATC
  CGCTCACCTA GATACTCTGC TTTCCCCTGT CCCAAGTGAA CCCTGTCAGA GCCTCCCCGG
  GTCATCCATC CCATCTGCCC GAGCCTCCCA GTGCATCCGA ATCTTCTGCC TCACTTCCCT
  R
  GCCCATCCTG ACAGCCTGCT TGTCCGCTGC ATCCCATCCT CAGCCTCCTC ATCCCATCCC
  TGTCTCCTGG CTGGTCCTTC AAGGCCAAGC CTCGCCTTCT TCCGTTAGCA TTTCCATTTC
  CCAGGCCTGA CACTCTCCTC TCAGATGTCT CCTCTCCCCA GCCCCTATAC CTCTTCTCTC
  CCAGTGCAGT ATGGCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370854522	MGP_WTSI_7_28944069	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258636801					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370854522	MGP_WTSI_7_28944069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27858475 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	102 bp proximal
Tssr65425	transcription start site region 65425	1976 bp downstream
Tssr65426	transcription start site region 65426	1515 bp downstream
Tssr65427	transcription start site region 65427	1486 bp downstream
Tssr65428	transcription start site region 65428	1469 bp downstream
Tssr65429	transcription start site region 65429	1456 bp downstream
Tssr65430	transcription start site region 65430	1410 bp downstream
Tssr65431	transcription start site region 65431	1396 bp downstream
Tssr65432	transcription start site region 65432	1373 bp downstream
Tssr65433	transcription start site region 65433	1261 bp downstream
Tssr65434	transcription start site region 65434	1201 bp downstream
Tssr65435	transcription start site region 65435	1054 bp downstream
Tssr65436	transcription start site region 65436	376 bp upstream
Tssr65437	transcription start site region 65437	430 bp upstream