rs258637314 SNP Detail

Summary

• ID
  rs258637314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGATTAT TTTATCACTC
  ATAAATTATT TAAAATATTT ACTAAAGTGT GAAGCTTTTG TAGATTAAGA TATAGTTGTT
  TTTGAAATGC TGATAAAGCC AAGCTTGGTG GTGCATGCCT TTAATCCCAG CATTAGGGAG
  GCAGAGGCAG GCAGATTTCT GAGTTCGAGG CCAGCCTGGT CTACAGAGTG AGTTCCAGGA
  Y
  AGCCAGGGCT ATACAGAGAA ACCCTGTCTC AAAAAACAAA AACAAAAACA AACAAACAAA
  CAAAAAGAAA TGCTGATAAG AGCATTACAT GTGGTTATTA TTATGCAAAA TAACATAAAA
  CTCTGTGACA TTTTAAGCAG CCAGTTTTTA TTTCTTCATA CTAATTTCTA GAATTCAAAT
  GTTCACTGTT GAACCAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364124399	MGP_WTSI_5_17301745	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258637314					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364124399	MGP_WTSI_5_17301745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000925 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Rr121714	regulatory region 121714	1484 bp distal
Tssr50146	transcription start site region 50146	452 bp upstream
Tssr50147	transcription start site region 50147	345 bp upstream
Tssr50148	transcription start site region 50148	319 bp upstream
Tssr50149	transcription start site region 50149	271 bp upstream
Tssr50150	transcription start site region 50150	245 bp upstream
Tssr50151	transcription start site region 50151	226 bp upstream
Tssr50152	transcription start site region 50152	1060 bp downstream
Tssr50153	transcription start site region 50153	1087 bp downstream
Tssr50154	transcription start site region 50154	1144 bp downstream