rs258648702 SNP Detail

Summary

• ID
  rs258648702
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA GGTGTATCTG
  GGGAAGTGGA ACATTTCGGG GTTAAAGGCC TTCAATCTTT ACATCAGTAA GACTTGGAGA
  AAGCCCCGCT TTAGAGCTAG GACAGGTAGG TAGGTAAGCA GCAGGCTCCC CCTACCTCCT
  AAGCCCCACC CACCCGGGGG CGGGGCCTCA GCCCCTCCCA CACATGCGCG CTGGGCCTCA
  M
  CGACCCCTGC CCAGCCAGCC TCCCCGCCCC CAACGGGAGC CCGCGCAGGT GGCAGCGCGC
  CTACCGTGAG CACGGCTGCA GGAGTCCCGG AGGTCCGTGC TCGGCGCAGG CATGATCGGC
  CAGAAGACCC TATACTCTTT CTTCTCTCCG ACCCCCACAG GGAAGCGGAC CACGCGCAGC
  CCGGAGCCGG TCCCAGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366325793	MGP_WTSI_5_114580400	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258648702					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366325793	MGP_WTSI_5_114580400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16309	CpG island 16309	1993 bp distal
Cpgi16310	CpG island 16310	within coordinates
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1644 bp downstream
Tssr48056	transcription start site region 48056	15 bp downstream
Tssr48057	transcription start site region 48057	within coordinates
Tssr48058	transcription start site region 48058	766 bp upstream
Tssr48059	transcription start site region 48059	793 bp upstream
Tssr48060	transcription start site region 48060	1819 bp upstream
Tssr52695	transcription start site region 52695	314 bp downstream
Tssr52696	transcription start site region 52696	1195 bp downstream
Ung	uracil DNA glycosylase	within coordinates