rs258649776 SNP Detail

Summary

• ID
  rs258649776
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41274568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGCCTG GTTCAACTTT
  CTTCTCAAAT TTTCAATGAA TCATAAGGTA TTAAAGATTC CTTCACCAAT AGAACTTACT
  TGCTCAAGAC CTACTTCCTA GAGATTTTTT TTCCTTCATA GAAGCCTGTC TGCAGTAGAT
  TTCTGACCTC ACCCCACTTA TCCACAGAAT AGGGGATGCC TTAGCTTCTC CTTACCTCAT
  R
  GCAGCTTAGC TTTCCTCTAA AAATGTTGAG CTCTTCTTGG TTTTCAGAAA ACTTTAGAAA
  TCTTATGATT TTCTCTCTTA CATATGTGCA TGTGCGAACA CACACACATG TACACGCATG
  CACACACACA CACACACACA CACACACACT CACACACTCT GTGTTCAGAG CCTGGGTCAG
  TACTGGGGTC TAGCTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320245464	CHEV_2_41240076	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258649776					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41274568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134			435 bp distal
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant
Rr556252	regulatory region 556252			1537 bp distal