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rs258649996 SNP Detail
Summary
  • ID
    rs258649996
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr12:112642146 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTAGA CAGAGCCACA AGGTGAGTAA
    A
    GTCCGCCTTA CTGAGACTTG CCACT                                      
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss324170095 CHEV_12_113913923 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs258649996 SNP A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112642146 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 880 bp upstream
Cpgi5173 CpG island 5173 803 bp distal
Gm30150 predicted gene, 30150 within coordinates
Rr369631 regulatory region 369631 173 bp downstream
Rr473553 regulatory region 473553 1447 bp distal
Rr473554 regulatory region 473554 1291 bp distal
Rr473555 regulatory region 473555 1312 bp distal
Rr473556 regulatory region 473556 within coordinates
Rr473557 regulatory region 473557 709 bp distal
Rr473558 regulatory region 473558 244 bp distal
Rr473559 regulatory region 473559 53 bp distal
Rr473560 regulatory region 473560 172 bp proximal
Tssr115391 transcription start site region 115391 1289 bp downstream
Tssr117877 transcription start site region 117877 1685 bp upstream
Tssr117878 transcription start site region 117878 1626 bp upstream
Tssr117879 transcription start site region 117879 1437 bp upstream
Tssr117880 transcription start site region 117880 1345 bp upstream
Tssr117881 transcription start site region 117881 1327 bp upstream
Tssr117882 transcription start site region 117882 948 bp upstream
Tssr117883 transcription start site region 117883 898 bp upstream
Tssr117884 transcription start site region 117884 875 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory