rs258651937 SNP Detail

Summary

• ID
  rs258651937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40345783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTATGC CCCAGATCAA
  AGAATATCAC TTAACTTAAA CTCAAAGTTC TGCCCTCCAT TCATCCTCCA CAAAACCTGA
  TGCCCACACT GCTTATGCTA ACACCAAACA CAAAGCCATG TTACAGAAAA TCAAAGTCCA
  GGCTGGATAT GTATAACATC ACCACGGCTG GTCACTTACC ATCCCCCCAC CCCACCCCCA
  S
  CCCCCACCCC CAATTAGGAA GGGGATCAGG TTCAGGGAGT ATACCAGGAT GTACATCACC
  CCACCCTATC CCCACAACAA TATAGGCTGA GCATACACAC AGTACTACCC ACCCGCTAGA
  CCACTGTCGG TTCCAGGTTG GCCAACCTCA AATGGCTCAA GAAGGAAGCC TCTCAATGAC
  AAATGACCAC ACACTCCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss377313179	MGP_WTSI_9_40242072	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs258651937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313179	MGP_WTSI_9_40242072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40345783 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	734 bp distal
Tssr88924	transcription start site region 88924	542 bp downstream
Tssr88925	transcription start site region 88925	614 bp downstream
Tssr88926	transcription start site region 88926	658 bp downstream
Tssr88927	transcription start site region 88927	669 bp downstream
Tssr88928	transcription start site region 88928	746 bp downstream