rs258656436 SNP Detail

Summary

• ID
  rs258656436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATAGACTG AAAGAAAGCT CAAGAAAGAA
  CTAATCATAT TTATACACAA CCCATGCTCC AATGCCCCAG GCAGGTGTCT GGTTTTTCTC
  AGTGTTACTT GATGGAAATC TTAGATAAAG GCAACATTAT TCAAATGTAA GAGAACTAAA
  Y
  TTGGAGTTCA AGTTCTGTAA AGTAAACTAG AGTAGGCAGA TCACAGCCCC AGGTATTTGC
  Taaggtaata tacaaacttt ctctcttcca taagttcagg gatagttttg cagcttgagg
  cagcccatag caaaaactag ttaacagggg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848307	CHEV_1_97209530	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258656436					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	475 bp proximal
Fam174a	family with sequence similarity 174, member A	675 bp upstream
Rr29863	regulatory region 29863	122 bp proximal
Rr396183	regulatory region 396183	408 bp upstream
Tssr8214	transcription start site region 8214	654 bp upstream
Tssr8215	transcription start site region 8215	725 bp upstream
Tssr8216	transcription start site region 8216	1134 bp upstream
Tssr8217	transcription start site region 8217	1153 bp upstream
Tssr8218	transcription start site region 8218	1171 bp upstream
Tssr8219	transcription start site region 8219	1197 bp upstream
Tssr13058	transcription start site region 13058	1102 bp downstream