rs258658338 SNP Detail

Summary

• ID
  rs258658338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTAGATG GCACCCGAAA
  TCTAGAGAGG TTCTGCCTGT AGCAGCCGGA CTGTGGCTCT GTGATAGCCT CTGTCATCTA
  TATGCCAGTA GAGAGGCATC TCGGAGTGGC AGGTGTCAGG GTTCTCAGCA CAGATGGTGG
  ACCAGTCTGA GGAATGTCCA GTGACCCTGC AGGTGTGGCT GGTCCTGCAG GCAGCAGTTT
  S
  ACTGTCTTTG TACCTCACAG GTTCTCTGCC CTAAGACCTA TGTAGGGTAA GTGAGAGGCG
  AGGCTGTGAG GCATTGCCCA ACATGGAGGA AGAGGGAAAA GGGGGGCTGG TTGGTGTCAG
  CGTTCAACAT CCAGCCATCA TTTTCTCAAG AACCGTTCTG TGGCAGGCTT AGGCACACAA
  GCGTGGCCTG CTAAAGGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170104	CHEV_12_113914567	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258658338					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642790 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1524 bp upstream
Cpgi5173	CpG island 5173	1447 bp distal
Cpgi5174	CpG island 5174	1747 bp proximal
Gm30150	predicted gene, 30150	386 bp downstream
Rr369631	regulatory region 369631	817 bp downstream
Rr473554	regulatory region 473554	1935 bp distal
Rr473555	regulatory region 473555	1956 bp distal
Rr473556	regulatory region 473556	409 bp distal
Rr473557	regulatory region 473557	1353 bp distal
Rr473558	regulatory region 473558	888 bp distal
Rr473559	regulatory region 473559	697 bp distal
Rr473560	regulatory region 473560	451 bp distal
Rr473561	regulatory region 473561	1970 bp proximal
Rr473562	regulatory region 473562	1982 bp proximal
Tssr115391	transcription start site region 115391	1933 bp downstream
Tssr117880	transcription start site region 117880	1989 bp upstream
Tssr117881	transcription start site region 117881	1971 bp upstream
Tssr117882	transcription start site region 117882	1592 bp upstream
Tssr117883	transcription start site region 117883	1542 bp upstream
Tssr117884	transcription start site region 117884	1519 bp upstream