rs258662123 SNP Detail

Summary

• ID
  rs258662123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165667868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACCATCA TCAGCCTCTG
  CACCATCAGC CTCTGCACCA TCATCAGCCT CTGCACCATC AGCCTCTGCA GCCACTTGGG
  CATGAGGAGA ACCCTGTGGC CAGAGGACCT GGGGTCTGTC TGTGTACGTT AGGTATTTGA
  CCAGCTTGGC TGACCTCCAA GACCCTTGTA ACTTTACCCT CCTAATTTTT CAGCTTCCTG
  M
  ATTCATGGGT GAATTGGTCA GAACCAACCT TTCACTTCAG CATCCCATCA GCAGTCCTTT
  TTGCTGCAGC CCGCCGTGAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAATGTA
  CTGTAATTTA AGTAGTCAAA GACCTAATGT TAACTGAGAA TTGATAGAGC TGGAGGTTAG
  TGGAGGAAGG TCTGATTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352251264	MGP_WTSI_1_167770430	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258662123					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352251264	MGP_WTSI_1_167770430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165667868 () rs orientation: forward

Symbol	Name	Function Class
Cd247	CD247 antigen	within coordinates
Cpgi956	CpG island 956	580 bp proximal
Gm71096	predicted gene, 71096	within coordinates
Gm71107	predicted gene, 71107	760 bp upstream
Rr372389	regulatory region 372389	1704 bp upstream
Rr422482	regulatory region 422482	778 bp distal
Rr422483	regulatory region 422483	359 bp proximal
Rr422484	regulatory region 422484	645 bp proximal
Rr422485	regulatory region 422485	771 bp proximal
Rr422486	regulatory region 422486	1870 bp proximal
Tssr268	transcription start site region 268	1371 bp downstream
Tssr269	transcription start site region 269	401 bp upstream
Tssr9850	transcription start site region 9850	1623 bp downstream
Tssr9851	transcription start site region 9851	757 bp upstream
Tssr9852	transcription start site region 9852	1370 bp upstream