rs258663717 SNP Detail

Summary

• ID
  rs258663717
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGCAG CGCTGTCCCA
  AACTGAGCCA GTTCAACATA GGTCAGCCAC AGGCAGAAGG CAGGTAACAC CCTGGCCTCC
  TGGCTTTACC TAACACTTAA TAGCAGGGCT CTCTGTTCAG ACACAATACA TTCACCGGGT
  GCCACACGTT TACACCCTGC CAGTAACATC TGCCGCAGTC TGGGAATCAA CACTAACAAA
  S
  GTATGGGCAA ATACTGGAAG GTTCCTAATC TGCCTTTCAA ATCCAGGTTT TGAGGTTGGG
  AGGGGACCAT CTAATTGTAT AGCCAAAGCA ACTATTTGAG TGCAATAGAC TTGAGATGTT
  TAAGGAAGCT GGCAATGGAA ATAAGTCAAG ACATACTTGC AAATACATTA GTGTAGGTGG
  TGATTCTGTA ATTCCTGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325113557	CHEV_16_22895767	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258663717					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714444 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1308 bp upstream
Tssr4819	transcription start site region 4819	353 bp downstream
Tssr4820	transcription start site region 4820	253 bp upstream
Tssr137563	transcription start site region 137563	1453 bp downstream
Tssr137564	transcription start site region 137564	1423 bp downstream
Tssr137565	transcription start site region 137565	1286 bp downstream
Tssr137566	transcription start site region 137566	1277 bp downstream
Tssr137567	transcription start site region 137567	909 bp downstream
Tssr137568	transcription start site region 137568	878 bp downstream
Tssr137569	transcription start site region 137569	857 bp downstream
Tssr137570	transcription start site region 137570	840 bp downstream
Tssr137571	transcription start site region 137571	502 bp downstream
Tssr137572	transcription start site region 137572	403 bp downstream
Tssr137573	transcription start site region 137573	393 bp downstream
Tssr137574	transcription start site region 137574	374 bp downstream
Tssr137575	transcription start site region 137575	364 bp downstream
Tssr137576	transcription start site region 137576	306 bp upstream
Tssr137577	transcription start site region 137577	728 bp upstream
Tssr137578	transcription start site region 137578	799 bp upstream
Tssr140504	transcription start site region 140504	1302 bp upstream
Tssr140505	transcription start site region 140505	1253 bp upstream
Tssr140506	transcription start site region 140506	833 bp upstream
Tssr140507	transcription start site region 140507	470 bp upstream
Tssr140508	transcription start site region 140508	428 bp upstream
Tssr140509	transcription start site region 140509	410 bp upstream
Tssr140510	transcription start site region 140510	362 bp upstream
Tssr140511	transcription start site region 140511	348 bp upstream
Tssr140512	transcription start site region 140512	863 bp downstream
Tssr140513	transcription start site region 140513	874 bp downstream
Tssr140514	transcription start site region 140514	907 bp downstream