rs258670220 SNP Detail

Summary

• ID
  rs258670220
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69911695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGATTGAG CAGCCCTGAA GGTAGGAGGC
  TTGTAGAGAG GATCATATGC ATTCGGGTCT TACTGGTTTG GAGACCCAGG TTTGCCACAT
  TCATTGGCCA GAAAACTTGT CAGCCTCAGG ATGGAGGGAC TCCAACTCCC ATAAGGCCTT
  K
  AGGTACTAGA TCCTTCAATG GTAGCGTGTG GTTGTCCACT GGACTGTTGG GAGTTGTGGT
  TCCTCTCTAT CCAGGCCAGT GGAGGGTGGC CCAGGAGAAA CCAGCAGGGG GCACATGGCT
  TCTGCCCTCC GCAAATGCTG GGGAGTGGGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732618	CHEV_11_69834371	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258670220					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69911695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	386 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	within coordinates
Rr402686	regulatory region 402686	292 bp upstream
Rr450197	regulatory region 450197	1980 bp distal
Rr450198	regulatory region 450198	97 bp proximal
Rr450199	regulatory region 450199	532 bp proximal
Rr450200	regulatory region 450200	1154 bp proximal