rs258678194 SNP Detail

Summary

• ID
  rs258678194
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44385785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATGCCTT AAAATGAACT GGAGAGCTGC
  AGGAATATAA ATAGGCCCAT GACAAAAGGG GTGCAGTGCT GGGAGCCCTG GCACCCTACA
  CTCTGGGAAG GATCCAGATA AGGAGGTCAA GGCTGCCATT GCAGCTCTGA AGGCCCCATG
  K
  GGAGAGGAGC CAGGTGCAGG AAGACATCCA ATGGAAAGTT GGAAGCAAGC TCTGCCATGG
  TGTCGTGGAT AGAGTCTGGA TGGAGATCCA GAAGGCTGGG TCATCTCCCA GCTATCCCCT
  GCCAGCCATG TGATCTCTCA GCACCCTGCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940970	CHEV_9_44282571	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258678194					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44385785 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm22540	predicted gene, 22540	1923 bp downstream
Rr195027	regulatory region 195027	985 bp distal
Rr195028	regulatory region 195028	1416 bp proximal
Rr203856	regulatory region 203856	1035 bp distal
Rr203857	regulatory region 203857	1455 bp proximal
Rr209142	regulatory region 209142	within coordinates
Rr209143	regulatory region 209143	1816 bp proximal