rs258685549 SNP Detail

Summary

• ID
  rs258685549
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGTGG TGGACTGTGT
  GTCTGGTAAG CCTTGGGTGG GAGCTGTAAC AGACAGTTGC TGGTGTTTTC ATGGCCCAGT
  ACCACATTTT TGGGGGTGTA AATTGAAATC ATATTCATTT TAAGGCAAGG ATGAATTCTG
  CTCTAATTTG AAATTGTATG TGCCAGTCCC CATGTCAGGG CAGGGAGATT GTGAAGTCCA
  S
  CTAAGTGTGG GGCCAGTTTC CTATAATTTC AGTGCTCTGA GGCAGAGGTG CATGGGTCTC
  TGGAGGTGGG AGGGGCTGAG TGGCATAGGG CCTGGTACAC TGGACACACT TGGAGATTTA
  GCGCCTGGGC ATCCATACCG TGTACCTTGG AGAGTGCTTG TGTACATTTC ACAGACAAAA
  CATACGTGGT CTTCAGGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032037	MGP_WTSI_10_80641155	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258685549					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032037	MGP_WTSI_10_80641155	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	234 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	1341 bp upstream
Rr402079	regulatory region 402079	1730 bp downstream
Rr435542	regulatory region 435542	1769 bp distal
Rr435543	regulatory region 435543	1352 bp distal
Rr435544	regulatory region 435544	851 bp distal
Rr435545	regulatory region 435545	1265 bp proximal
Rr435546	regulatory region 435546	1757 bp proximal
Snord37	small nucleolar RNA, C/D box 37	551 bp upstream
Tssr94695	transcription start site region 94695	1762 bp downstream
Tssr94696	transcription start site region 94696	673 bp downstream
Tssr94697	transcription start site region 94697	573 bp downstream
Tssr94698	transcription start site region 94698	322 bp downstream
Tssr94699	transcription start site region 94699	740 bp upstream
Tssr94700	transcription start site region 94700	924 bp upstream
Tssr94701	transcription start site region 94701	984 bp upstream
Tssr94702	transcription start site region 94702	1161 bp upstream
Tssr94703	transcription start site region 94703	1224 bp upstream
Tssr94704	transcription start site region 94704	1243 bp upstream
Tssr94705	transcription start site region 94705	1271 bp upstream
Tssr94706	transcription start site region 94706	1463 bp upstream
Tssr94707	transcription start site region 94707	1513 bp upstream
Tssr94708	transcription start site region 94708	1578 bp upstream
Tssr94709	transcription start site region 94709	1832 bp upstream
Tssr98570	transcription start site region 98570	968 bp downstream
Tssr98571	transcription start site region 98571	1336 bp downstream