rs258694709 SNP Detail

Summary

• ID
  rs258694709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:93774864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGCAAGC ACATGCACGC
  ACACACACTC CTTATACTAC AATAGCCTAT AGAATGCTTT TGCTTTCCTG GTGTGCTGAT
  GAAATAATGT GATGGAACAC AACCACAGCA CATGCTGAAG GAGCACGCAG GAAAGGAGAT
  CAGAACCACC ATGAGGACAG GTGAGGCAGG ATAGAAGGGG GGGGGGGGGG GGAAGTGCAC
  S
  GAAAGCTAAA GACCGCAGTA GACAAGGGTA AAAGGTAAGC CGCCGGCAGG TAAAGAGCAA
  GCATCAAAGC CCAACAGTTA CAGAGCCCGG GGCCTACTAG AATCCCACAC AACATAGGCT
  GTGTCTCATA GCCTCATGAG GAGTATCTCT TGTTCTATGT GCTCCATCTC CACCTTCTTC
  AAACTTTATA CCACACCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384313867	MGP_WTSI_11_93745352	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258694709					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384313867	MGP_WTSI_11_93745352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:93774864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3539	CpG island 3539	784 bp proximal
Gm72169	predicted gene, 72169	within coordinates
Mbtd1	mbt domain containing 1	1814 bp upstream
Rr247507	regulatory region 247507	within coordinates
Rr366736	regulatory region 366736	1646 bp upstream
Tssr3641	transcription start site region 3641	1786 bp upstream
Tssr104149	transcription start site region 104149	1064 bp upstream
Tssr104150	transcription start site region 104150	1233 bp upstream
Tssr104151	transcription start site region 104151	1846 bp upstream
Tssr110106	transcription start site region 110106	224 bp downstream
Tssr110107	transcription start site region 110107	1622 bp downstream
Tssr110108	transcription start site region 110108	1686 bp downstream
Tssr110109	transcription start site region 110109	1714 bp downstream
Utp18	UTP18 small subunit processome component	within coordinates