rs258694794 SNP Detail

Summary

• ID
  rs258694794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105867159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAATGCG CCCGCATGCA
  TGGAACGTCA ATTGGAGGCT GCACGGTACC GGTCTGGTGA GCCGAGATCC CGGGGCCTGG
  AAGCCCCTTT ACCCCCAGTC TCGGGTGCCC TCTCCCGGTG CTGACCCTCT CGAGTCCTCC
  CAGCGCCGTG TGGCCCTCCT CGGCCATACC TGGCGTCCTG GCCCTGCCCC AGCTCAGCTC
  Y
  ACAAATCCGA TCTCAGATTC AGACTGGTCC CGCCACGGGG TTCTGTGAGG TTACCATAGA
  AACAAGGCCT TCCATCTGAC ACCTTATAAC TTTGCTCTCC CCACCGTAGA TGGTTCCCTT
  CTGCTCGGGG TCTCCAGCCT GAGTGGTCGC TGCTGGGTAG GTTCTCTGTG GTTTTTCAAG
  GATCCTAGTG CGGCCCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359121811	MGP_WTSI_3_105762761	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258694794					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359121811	MGP_WTSI_3_105762761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105867159 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	within coordinates
Gm42890	predicted gene 42890	within coordinates
Rr582821	regulatory region 582821	330 bp distal
Rr582822	regulatory region 582822	78 bp distal
Rr582823	regulatory region 582823	246 bp proximal
Rr582824	regulatory region 582824	1049 bp proximal
Tssr997	transcription start site region 997	632 bp upstream
Tssr31092	transcription start site region 31092	416 bp downstream
Tssr31093	transcription start site region 31093	302 bp downstream
Tssr34944	transcription start site region 34944	606 bp upstream
Tssr34945	transcription start site region 34945	563 bp upstream
Wdr77	WD repeat domain 77	Intron