rs258696670 SNP Detail

Summary

• ID
  rs258696670
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCAAC TCCTGGAAAC
  ATGTCAGAAA GTACAGAGTG GGTGCCTGTG GGATCAGCAT GCGGGGGGTG GTGGTGGTGA
  GGTGTGGGGC TGCTTTCTCC CGAGGCTACC GTGATAGACA GTTGTACCTT GGCTGGCAGC
  CTCTACCCCA TTTCCAGGAT GTCAGTCTCT GCAGACGTAT GGGGGAGGTG GGGAAGGGGT
  M
  TACAGAGCCT AGGGTGTGCC TGGGAATGTA CTCCCAGGAA GTGACTGGTT GAAAAGTCAG
  CAGATCTCCT GGGGGATAGA GGGGTGGGCT GAAGCTCTGT GGGTTGCCTC TCTCAGCCCT
  GACCTGTGAA CAGGGAGGCT GGGGGTTGGA GGAACACAGC TTCCCCCTGT TCCTGGGGGG
  ACATGCTGGA CAGCCTTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192975	MGP_WTSI_15_101100053	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258696670					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192975	MGP_WTSI_15_101100053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167503 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1662 bp downstream
Rr510002	regulatory region 510002	1050 bp distal
Tssr133218	transcription start site region 133218	1748 bp downstream
Tssr133219	transcription start site region 133219	1726 bp downstream
Tssr133220	transcription start site region 133220	1631 bp downstream
Tssr133221	transcription start site region 133221	1571 bp downstream
Tssr133222	transcription start site region 133222	206 bp downstream
Tssr133223	transcription start site region 133223	454 bp upstream
Tssr133224	transcription start site region 133224	497 bp upstream
Tssr133225	transcription start site region 133225	508 bp upstream
Tssr133226	transcription start site region 133226	529 bp upstream
Tssr133227	transcription start site region 133227	537 bp upstream
Tssr133228	transcription start site region 133228	555 bp upstream
Tssr133229	transcription start site region 133229	566 bp upstream
Tssr133230	transcription start site region 133230	644 bp upstream
Tssr133231	transcription start site region 133231	676 bp upstream
Tssr133232	transcription start site region 133232	695 bp upstream
Tssr133233	transcription start site region 133233	723 bp upstream
Tssr133234	transcription start site region 133234	741 bp upstream
Tssr133235	transcription start site region 133235	774 bp upstream
Tssr133236	transcription start site region 133236	823 bp upstream
Tssr133237	transcription start site region 133237	845 bp upstream
Tssr133238	transcription start site region 133238	878 bp upstream
Tssr133239	transcription start site region 133239	920 bp upstream
Tssr133240	transcription start site region 133240	1012 bp upstream
Tssr133241	transcription start site region 133241	1029 bp upstream
Tssr133242	transcription start site region 133242	1037 bp upstream
Tssr133243	transcription start site region 133243	1063 bp upstream
Tssr133244	transcription start site region 133244	1084 bp upstream
Tssr133245	transcription start site region 133245	1128 bp upstream
Tssr133246	transcription start site region 133246	1153 bp upstream
Tssr133247	transcription start site region 133247	1241 bp upstream
Tssr133248	transcription start site region 133248	1261 bp upstream
Tssr136545	transcription start site region 136545	677 bp downstream
Tssr136546	transcription start site region 136546	799 bp downstream
Tssr136547	transcription start site region 136547	875 bp downstream
Tssr136548	transcription start site region 136548	885 bp downstream
Tssr136549	transcription start site region 136549	919 bp downstream
Tssr136550	transcription start site region 136550	1025 bp downstream
Tssr136551	transcription start site region 136551	1101 bp downstream