rs258696961 SNP Detail

Summary

• ID
  rs258696961
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79698634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCACCAGT GGGCAGAGTG
  TCCTGCTGCT CATGGTTTCC ACCCTTTGTC CAGCCATGAG CCACCTGAAC GGGCACAAGC
  TGCACGGGAA GTCAGTGCGC ATTACACTGT CCAAGCATCA GAGTGTGCAG CTGCCTCGGG
  AGGGTCAGGA GGACCAGGGC CTGACCAAGG ACTATGGCAG CTCCCCGCTG CACCGCTTCA
  A
  GAAACCAGGC TCCAAGAACT TCCAGAACAT CTTTCCACCC TCAGCTACCC TGCACCTCTC
  CAACATCCCG TAAGTCAGCC AGAGGTCTTG TTTGTGGGTG GGCCACGAAG GGCTCCTGAT
  CTCCCCCACC CCATCCCCGT GTGAGCCCAG GCCGATGGCT CCCGTCTGTC TCTGCAGGCC
  CTCTGTGTCA GAGGACGACC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381010663	MGP_WTSI_10_79325545	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258696961					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381010663	MGP_WTSI_10_79325545	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79698634 () rs orientation: forward

Symbol	Name	Function Class
Gm17134	predicted gene 17134	1137 bp downstream
Mir6910	microRNA 6910	148 bp downstream
Plppr3	phospholipid phosphatase related 3	within coordinates
Ptbp1	polypyrimidine tract binding protein 1	within coordinates
Rr434971	regulatory region 434971	1261 bp proximal
Rr434972	regulatory region 434972	1624 bp proximal
Tssr94416	transcription start site region 94416	1107 bp downstream