rs258698784 SNP Detail

Summary

• ID
  rs258698784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40906178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTGTTT TATCTCTCCT
  GTAGGGGGAG ATAAATGTTG AACCAATTTA GTTTCTTAGG TTTTGCACGC AGAACCAATT
  TAGTTTCTTA GGTTTTGCAC GCAGAAATGC TCACTAACTT ATTTGCTTTT GTTATTTTGC
  TTGCTTTTTG AAACACTATC TACTTGTGTA GCCCAGGGGG TTGTGGAATT CTTGATCCTC
  R
  CGTCACTGTC TTCTTCAAGA TACTGGGATT ATAGACATTC TGCTCTCCTT ATTAATTCTT
  ACTAAATTTT GACACCTTAA GGAAAAACAA AACAAAAGCA CTGAGTTTTG CTCTCCATCT
  TGTATTAGTA CAATTCTGGC CTGCTGAAAA GAGCAGTTTA CTACCATTGC TAAATAAGTG
  AAGAGAACAT GGTATATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357671155	MGP_WTSI_3_40755665	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258698784					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671155	MGP_WTSI_3_40755665	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40906178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	538 bp distal
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	1930 bp downstream
Rr575872	regulatory region 575872	1905 bp distal
Rr575873	regulatory region 575873	1668 bp distal
Rr575874	regulatory region 575874	941 bp distal
Rr575875	regulatory region 575875	32 bp distal
Rr575876	regulatory region 575876	166 bp distal
Tssr28976	transcription start site region 28976	1929 bp downstream
Tssr28977	transcription start site region 28977	1891 bp downstream
Tssr28978	transcription start site region 28978	1803 bp downstream
Tssr28979	transcription start site region 28979	1787 bp downstream
Tssr28980	transcription start site region 28980	1775 bp downstream
Tssr28981	transcription start site region 28981	1325 bp downstream
Tssr28982	transcription start site region 28982	1086 bp downstream
Tssr28983	transcription start site region 28983	905 bp downstream