rs258700219 SNP Detail

Summary

• ID
  rs258700219
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13440719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGGAAAG GCATCTGAAC
  ATGTCACATG TCACATTTTT CACTTGGGAA ACACATGTTG TGGCTTGCAC CTTTAATCCC
  AGCACTTGGG AGGCAGAGGC AGGCAGATCT CTGTTTGGGG CCCAGCCTGA TTTACATAGA
  GTTTCGGGAT ATCCAGGGCT ACATAAAGAT ATTCTGTCTC AATGGGAAAA AAATAAAAGG
  K
  TTTTCATTGG GGACTGGGGA AATGGCTTAA CGTTTAAGAT CACTGGCTGC TCTTCCAGAG
  GACCCTGATT AGATCCCCAG CAGCCACATA TCAACTCACA ACCAGCTGTA ACTCAAGTTC
  TGGGGCATCT GATGCCCTCT TCTGGCCTCT GCAGGGACTT GGCACACAGG TGGTGCACAT
  GCAGGCAAAA CAGCTGTACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322506509	CHEV_8_13390719	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258700219					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13440719 () rs orientation: forward

Symbol	Name	Function Class
Atp4b	ATPase, H+/K+ exchanging, beta polypeptide	within coordinates
Gm45410	predicted gene 45410	387 bp upstream
Rr659923	regulatory region 659923	129 bp proximal
Tssr80441	transcription start site region 80441	1904 bp upstream
Tssr80442	transcription start site region 80442	1017 bp upstream
Tssr80443	transcription start site region 80443	853 bp upstream
Tssr80444	transcription start site region 80444	616 bp upstream