rs258708034 SNP Detail

Summary

• ID
  rs258708034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAGCAA TAGGTATTGT
  TCTTGTTTAC AACGTACGCG AAGTCATGCC TTGACATTTT TACTCTTAAC ATCATTTGGA
  AAGGTTCAAG CTGGTACAAT TGTAACGCCA GCTCTACTAT TCTAGTTTCA AAGCGCCCAG
  AGTGTTTATT GCTGGAAAGT CCAGCAATAG GTAGCAGGTC CCTTGTGGAG GCTAGAGATG
  R
  TTTCGTTTGG AGAGTAAACC AAGGTCCAGG ATGAAGTCAA AAGAAGGGGG CTCTGCAACC
  CGCCTTTAAG ATACCCACTA ACAGCAACCA TTTTCTCATC ACAGAGGCAA GGCTAACTGA
  CCTGGAAAGG AGGAGCCTGG GCTGCTGTCC CTCAACGGAA GAACCAAAGA GAAAGAAAAA
  AACAAACAGC ACCCGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847515	MGP_WTSI_5_91334110	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258708034					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847515	MGP_WTSI_5_91334110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052943 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1880 bp upstream
Rr614420	regulatory region 614420	1891 bp distal
Rr614422	regulatory region 614422	1201 bp distal
Tssr47224	transcription start site region 47224	1375 bp downstream
Tssr47225	transcription start site region 47225	1273 bp downstream
Tssr47226	transcription start site region 47226	1204 bp downstream
Tssr47227	transcription start site region 47227	1010 bp downstream
Tssr47228	transcription start site region 47228	947 bp downstream
Tssr47229	transcription start site region 47229	926 bp downstream
Tssr47230	transcription start site region 47230	901 bp downstream
Tssr47231	transcription start site region 47231	871 bp downstream
Tssr47232	transcription start site region 47232	724 bp downstream
Tssr47233	transcription start site region 47233	674 bp downstream
Tssr47234	transcription start site region 47234	639 bp downstream
Tssr47235	transcription start site region 47235	104 bp upstream
Tssr47236	transcription start site region 47236	124 bp upstream
Tssr47237	transcription start site region 47237	173 bp upstream
Tssr47238	transcription start site region 47238	179 bp upstream
Tssr47239	transcription start site region 47239	239 bp upstream
Tssr47240	transcription start site region 47240	251 bp upstream
Tssr47241	transcription start site region 47241	266 bp upstream
Tssr47242	transcription start site region 47242	303 bp upstream
Tssr47243	transcription start site region 47243	326 bp upstream
Tssr47244	transcription start site region 47244	360 bp upstream
Tssr47245	transcription start site region 47245	380 bp upstream
Tssr47246	transcription start site region 47246	431 bp upstream
Tssr47247	transcription start site region 47247	475 bp upstream
Tssr47248	transcription start site region 47248	538 bp upstream
Tssr47249	transcription start site region 47249	608 bp upstream
Tssr47250	transcription start site region 47250	746 bp upstream
Tssr47251	transcription start site region 47251	810 bp upstream
Tssr47252	transcription start site region 47252	862 bp upstream
Tssr51810	transcription start site region 51810	1941 bp upstream
Tssr51811	transcription start site region 51811	1887 bp upstream
Tssr51812	transcription start site region 51812	857 bp upstream
Tssr51813	transcription start site region 51813	840 bp upstream
Tssr51814	transcription start site region 51814	123 bp downstream
Tssr51815	transcription start site region 51815	157 bp downstream
Tssr51816	transcription start site region 51816	191 bp downstream