rs258715161 SNP Detail

Summary

• ID
  rs258715161
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82601642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTACAC TGTGTTTTCT
  AGAACAGAGA TTCTAAGACT TCCCAAGAAG TCAGTGCTCT GCAGGGCCCA GGCATAGCTC
  TGCCCATGAT ACACATAGGA AAAACTGGGT CAGGTCAAGA GAGCTCTCCG GGTGAGGCCA
  GGGCCCCTAT CCTGGAGGAG GACATCGCCC AGGTCTGCAT CCCTGGTTTC CACGGCCGCT
  S
  CTGTCGCTGT AGGCTGCGCT ACCTCTCAAG CTGATTGGGC ACATCTCATT TTTAATTGCA
  AACTTGGTCT CTAGAAAACC CATCAATTCA GGGTTTCAAG AGCCTTATCA TGCCCGCATT
  CACACACGCG CCCGTGTGCA GCTAGTGTCT TTTGGTAGCA CTGGCAGGGC GCTTTCCCCA
  AGTGGGGGGC AGCTCTTATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436719	MGP_WTSI_18_82752909	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258715161					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436719	MGP_WTSI_18_82752909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82601642 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58829	predicted gene, 58829			1105 bp downstream
Mbp	myelin basic protein			Intron
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			148 bp proximal
Tssr152152	transcription start site region 152152			591 bp upstream
Tssr152153	transcription start site region 152153			619 bp upstream
Tssr152154	transcription start site region 152154			733 bp upstream
Tssr152155	transcription start site region 152155			771 bp upstream
Tssr152156	transcription start site region 152156			844 bp upstream
Tssr152157	transcription start site region 152157			895 bp upstream
Tssr152158	transcription start site region 152158			952 bp upstream
Tssr152159	transcription start site region 152159			982 bp upstream
Tssr152160	transcription start site region 152160			1032 bp upstream
Tssr152161	transcription start site region 152161			1049 bp upstream
Tssr152162	transcription start site region 152162			1065 bp upstream
Tssr152163	transcription start site region 152163			1090 bp upstream
Tssr152164	transcription start site region 152164			1130 bp upstream
Tssr152165	transcription start site region 152165			1183 bp upstream
Tssr152166	transcription start site region 152166			1249 bp upstream
Tssr152167	transcription start site region 152167			1264 bp upstream
Tssr152168	transcription start site region 152168			1299 bp upstream
Tssr152169	transcription start site region 152169			1360 bp upstream
Tssr152170	transcription start site region 152170			1441 bp upstream
Tssr152171	transcription start site region 152171			1501 bp upstream
Tssr152172	transcription start site region 152172			1608 bp upstream
Tssr152173	transcription start site region 152173			1631 bp upstream
Tssr152174	transcription start site region 152174			1649 bp upstream
Tssr152175	transcription start site region 152175			1672 bp upstream
Tssr152176	transcription start site region 152176			1881 bp upstream
Tssr154083	transcription start site region 154083			700 bp downstream
Tssr154084	transcription start site region 154084			724 bp downstream
Tssr154085	transcription start site region 154085			996 bp downstream
Tssr154086	transcription start site region 154086			1551 bp downstream
Tssr154087	transcription start site region 154087			1766 bp downstream
Tssr154088	transcription start site region 154088			1806 bp downstream
Tssr154089	transcription start site region 154089			1917 bp downstream
Tssr154090	transcription start site region 154090			1989 bp downstream