rs258715288 SNP Detail

Summary

• ID
  rs258715288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:64084804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTACTCTG CTTAATGTAA
  GCAAGCTGAA CATTTTGAAA CTGGCTCCTG GTGGGCATGT GGGCCGTTTC TGCATCTGGA
  CGGAGAGTGC TTTCCGGAAG TTGGATGAGC TGTATGGCAC TTGGCGGAAG GCTGCTTCCC
  TCAAGAGTAA CTATAAGTGA GTTTTCCCTT ATTTATTACA CGTCAATGAC TAATGTGTGC
  R
  CTAACATCCT CCATAAGTTC TGCATTCACA TTTTGTTTGC GTTTTCCATT GTTTGGATGT
  GCCTCACCTG TGATTATTAA ATGAAGATGT AAAGGTTTAT TCTGTATCTG GAGAGTTGAA
  ACATTTAAAT TAAAATTTGT ACTGCTTTGT GTTCAGTTAG AGAATGAGAC TTTGGACTTC
  TCTCTTCCTT CCCCCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838365	MGP_WTSI_9_64025329	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258715288					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838365	MGP_WTSI_9_64025329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64084804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21924	CpG island 21924	1654 bp proximal
Gm22455	predicted gene, 22455	329 bp downstream
Gm22571	predicted gene, 22571	1580 bp downstream
Gm23136	predicted gene, 23136	763 bp downstream
Rpl4	ribosomal protein L4	Intron
Rr368801	regulatory region 368801	1731 bp upstream
Rr681196	regulatory region 681196	1262 bp proximal
Rr681197	regulatory region 681197	1828 bp proximal
Rr681198	regulatory region 681198	1962 bp proximal
Snapc5	small nuclear RNA activating complex, polypeptide 5	1752 bp upstream
Snord16a	small nucleolar RNA, C/D box 16A	2000 bp downstream
Tssr85599	transcription start site region 85599	1909 bp downstream
Tssr85600	transcription start site region 85600	504 bp downstream
Tssr85601	transcription start site region 85601	124 bp downstream
Tssr85602	transcription start site region 85602	70 bp downstream
Tssr85603	transcription start site region 85603	190 bp upstream
Tssr85604	transcription start site region 85604	230 bp upstream
Tssr85605	transcription start site region 85605	753 bp upstream
Tssr85606	transcription start site region 85606	878 bp upstream
Tssr85607	transcription start site region 85607	1749 bp upstream
Tssr85608	transcription start site region 85608	1767 bp upstream
Tssr90132	transcription start site region 90132	266 bp downstream
Tssr90133	transcription start site region 90133	821 bp downstream
Tssr90134	transcription start site region 90134	873 bp downstream