rs258715381 SNP Detail

Summary

• ID
  rs258715381
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121126990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCCCACC CCCCATGCAG AGGCAGCCAA
  GAAAATGACT TGTCATGCTG GGGTGGGGGG TGGGGGCGGA GCTGGAGCTG GAGGCTGAGC
  TTAGCGCGca cacacacaca cacacactca cacacTGCGG CAGACTGCAG CTGCCTGAGC
  M
  CCCCCCCCCC CGCCTCACTG CAGAGACACC TGCCCTCCTG CCCACTCAGC TTCACACCCG
  AAGCCCACCC CCAACCACAG CACTGGCTGT GGGAAGCGCC CCAATCTCTT AAGATAGTCT
  TCTGCAAAGA TAAAGGGGAA AAAAAACCCG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320482567	CHEV_2_121122245	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258715381					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121126990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14978	predicted gene 14978			501 bp upstream
Map1a	microtubule-associated protein 1 A			Intron
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			1211 bp downstream
Rr563799	regulatory region 563799			1045 bp distal
Rr563800	regulatory region 563800			512 bp distal
Rr563801	regulatory region 563801			11 bp distal
Rr563802	regulatory region 563802			997 bp proximal
Tssr19740	transcription start site region 19740			1023 bp downstream