rs258716590 SNP Detail

Summary

• ID
  rs258716590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13258901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAATA ATTCAGAGAG
  AGAGAGAGAG AGAGAGAATT GAAGGAGCAG GGTACAGGCT TTGACTGCCA CCTTCTGGGT
  GTGAGCAGCC AGCCTTGGCA GTGTCTGTTT AGACACAGGA ACAGTGGGAC CATCTAGGGA
  CAACAGTGCC TCTGGCTTTC TTGCCCTGCT GCAGAACAGT GACTAAGCAC ATTTGGAGAC
  Y
  GTGGTCCCTG TAAGGAAATG CTACTTCTGA GATACCTAAA TATGAAAACT AATAGGTTGC
  AGTATTTATC AGCCTTGGAA ATGAGACACT GAGAAAGGCT TGGTCCAGCT TCCAGGGTTG
  GGTCTATGTC TTGGTGGGTT TAACGGAATC CTGGGTGGTG TCAGGCCTCC GGAAAATGCA
  GAATTGTCAG CCTCACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505104	CHEV_8_13208901	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258716590					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13258901 () rs orientation: forward

Symbol	Name	Function Class
Gm63815	predicted gene, 63815	1532 bp downstream
Rr381722	regulatory region 381722	within coordinates
Rr659882	regulatory region 659882	within coordinates
Rr659883	regulatory region 659883	238 bp distal
Rr659884	regulatory region 659884	118 bp distal
Rr659885	regulatory region 659885	619 bp proximal