rs258719044 SNP Detail

Summary

• ID
  rs258719044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136493989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTTGTG TGTTGGTCCT
  GAGGAAACAC TTCCCACAAG ATTTCACCTC AATGATGTGG GGGCAGTCCA TCGGCCACTG
  TCCCGGAAGA ACAAAGTTCT GGTCTCTTGT TTATCACAGC TGGTTCTTCA GCTCGAGCTC
  ATTTTAAACC ACAGATTCTT CACACAAATG GCCTGGTAGA GTCTTTGCTT CCCTCTGAAA
  Y
  GTCACAAGCT GGGCCACTGT CGTCTGCACT GCTCTCAACA TTCTTGTCTC TCTAGTTTCT
  ACGTAACAGG TCCCTGAGTT CTCCACACTC CATGGCTTTA GTACAATGTC CTACCAATCT
  GCCTCTAATC AACATGCCCA GGTCTGTCAC AGGAATTCTG GGGCTGGAGC AGGAACATGG
  AGCTGATGTT TTCTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370211509	MGP_WTSI_6_136465512	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258719044					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370211509	MGP_WTSI_6_136465512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136493989 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1798 bp upstream
Cpgi18104	CpG island 18104	1610 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	1412 bp proximal
Rr145858	regulatory region 145858	1211 bp proximal
Rr400014	regulatory region 400014	1577 bp upstream
Rr400015	regulatory region 400015	1975 bp upstream
Tssr59315	transcription start site region 59315	1795 bp upstream
Tssr59316	transcription start site region 59316	1829 bp upstream
Tssr59317	transcription start site region 59317	1875 bp upstream
Tssr63803	transcription start site region 63803	1507 bp downstream
Tssr63804	transcription start site region 63804	1770 bp downstream