rs258720098 SNP Detail

Summary

• ID
  rs258720098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:58992640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGATTTT TTGCTGCATT
  GGTCTCCAGG ACCGTGAATT TAGGTGTCAG TGTACCCAAG GTTATTATTG ATCGTTGCAG
  AAGGCTCTTG GCAAGTTTGC TTTTGCAAGA TTTGGATAGT GCGTGGTTTT TTTTTTTTTT
  TTTTTTTTTA ACCAGGGTTT TCTGAATACC AGCAGAGACA GGGCCGAATG TTCTTGAGTA
  W
  GCTTGCAGCC AACATCTTTT AGCTGTATCA GAAAATGTCT TTTAGTGCTC CAGGTCCGGG
  GTGTATTGCA AGAGATCTTG AATGCATCAC TGCTGTCATG AGGATCGGAA TATTTTCCAT
  CGTCATACTG GGCTGTGTTT AGGCCTCGTA TAATACATAA TGAATAGTAA CAGAGCAGCA
  GTGTTTGGCC AGCGATGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354128827	MGP_WTSI_2_59000353	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258720098					SNP	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354128827	MGP_WTSI_2_59000353	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:58992640 () rs orientation: forward

Symbol	Name	Function Class
Ccdc148	coiled-coil domain containing 148	1613 bp upstream
Cpgi11668	CpG island 11668	98 bp distal
Pkp4	plakophilin 4	within coordinates
Rr56883	regulatory region 56883	within coordinates
Rr396983	regulatory region 396983	1456 bp downstream
Tssr17838	transcription start site region 17838	1942 bp downstream
Tssr17839	transcription start site region 17839	1471 bp downstream
Tssr17840	transcription start site region 17840	1415 bp downstream
Tssr17841	transcription start site region 17841	1400 bp downstream
Tssr17842	transcription start site region 17842	1242 bp downstream
Tssr17843	transcription start site region 17843	660 bp downstream
Tssr17844	transcription start site region 17844	323 bp downstream
Tssr17845	transcription start site region 17845	49 bp downstream
Tssr24158	transcription start site region 24158	1661 bp upstream
Tssr24159	transcription start site region 24159	1633 bp upstream