rs258722279 SNP Detail

Summary

• ID
  rs258722279
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103225036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtgtgtgt tcgtgtatag aggtgtctgt
  ggagttcaaa aaaaaaaaaa aaaaaaagag ttctattccc tggagctgga gttataggag
  gctgtatcct gtccagtatg ggtgtgagaa tcaaacttag atctcttaag tgctcttaac
  K
  gctaagccat ctctccggcc cTAAATGAAT GGATTTTTAA ACTGTATACT TGCTTCCTAG
  GTCAAGCAAC ATTTTAATAT AATCAAGTAA CATTGATTTA TTACATAGCC GTTTCTCATt
  ttttttatgc atttcagagt tttggggaaa                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160938	CHEV_9_103250167	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258722279					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103225036 () rs orientation: forward

Symbol	Name	Function Class
Rr202394	regulatory region 202394	1108 bp proximal
Rr207098	regulatory region 207098	within coordinates
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	113 bp upstream