rs258722357 SNP Detail

Summary

• ID
  rs258722357
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34993697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCATTAG TAGAGGCTCA
  GGTCAGGGCC CCGCCTCTCC TGGGCGGCCT CTGCCCTAGC CCGCCCTGCC GCTCCTCCTC
  TCCGCAGGCT CGCTCCCACG GTCCCCGAGG TGGGCGGGTG AGCCCAGGAT GACGGCTGTA
  GAACCCCGGC CTGACTCGCC CTCGCCCCCG CGCCGGGCCT GGGCTTCCCT AGCCCAGCTC
  K
  CACCCGGGGG CCGTCGGAGC CGCCGCGCGC CCAGCTCTAC GCGCCTGGCG CCCTCCCCAC
  GCGGGCGTCC CCGACTCCCG CGCGCGCTCA GGCTCCCAGT TGGGAACCAA GGAGGGGGAG
  GATGGGGGGG GGGGGTGTGC GCCGACCCGG AAACGCCATA TAAGGAGCAG GAAGGATCCC
  CCGCCGGAAC AGACCTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400248329	MGP_WTSI_18_35020298	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258722357					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400248329	MGP_WTSI_18_35020298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34993697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	within coordinates
Egr1	early growth response 1	563 bp upstream
Rr370358	regulatory region 370358	511 bp upstream
Rr405587	regulatory region 405587	23 bp upstream
Rr535727	regulatory region 535727	811 bp distal
Rr535728	regulatory region 535728	612 bp distal
Tssr150487	transcription start site region 150487	317 bp upstream
Tssr150488	transcription start site region 150488	556 bp upstream
Tssr150489	transcription start site region 150489	1826 bp upstream
Tssr150490	transcription start site region 150490	1852 bp upstream
Tssr150491	transcription start site region 150491	1880 bp upstream
Tssr150492	transcription start site region 150492	1952 bp upstream
Tssr152831	transcription start site region 152831	218 bp upstream
Tssr152832	transcription start site region 152832	783 bp downstream