rs258722710 SNP Detail

Summary

• ID
  rs258722710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95726607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTGGTAC CGAAGACGAA ACGCTACTCC
  GCCGTCCCTT CGGCTGCAGA GAGCTTTGCC TTTAGATTTT CTACCACAGG AAAGGCCCAA
  AGCTACCTAG GCAGAAAAtt ttctttcttt tttttttttt cttttctttt tttttttttt
  Y
  ttttttcttt tttttttttt tttttGCAAC GCAATAGCAG CAATAGACCA GCAGAAGAAA
  TGCGCACGCG CACGGAAGCC CCGCCCCTCC GCTTCCTCCT CAATCTTGAG CACGGGGGCC
  GAGGGGGCGT GATGGCGCTG CGATTCGACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320841218	CHEV_3_95623218	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258722710					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95726607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13521	CpG island 13521	within coordinates
Gm29948	predicted gene, 29948	within coordinates
Rprd2	regulation of nuclear pre-mRNA domain containing 2	mRNA-UTR
Rr375410	regulatory region 375410	within coordinates
Rr581038	regulatory region 581038	465 bp distal
Rr581039	regulatory region 581039	within coordinates
Rr581040	regulatory region 581040	254 bp proximal
Tssr30646	transcription start site region 30646	24 bp upstream
Tssr34543	transcription start site region 34543	494 bp upstream
Tssr34544	transcription start site region 34544	418 bp upstream
Tssr34545	transcription start site region 34545	388 bp upstream
Tssr34546	transcription start site region 34546	305 bp upstream
Tssr34547	transcription start site region 34547	220 bp upstream
Tssr34548	transcription start site region 34548	48 bp upstream
Tssr34549	transcription start site region 34549	51 bp downstream