rs258723915 SNP Detail

Summary

• ID
  rs258723915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90981985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCGAGGT CTGAGATCTG
  AGGGTGGTGT AGAGTTTCAC AGGGAACTGC TGGTTTGGTG TTTTACCGAG TACAGCACCT
  GGGTCCTCAT CCAGCCGCAC CACCTTGCCA TGAGTGGCTT GGAGGGTTTA CAGGTTCTTG
  ACCTCAGGAA CACCTTCCTC TAGGATCCAG GGCCCCAGAT CCACTTCGGC GGGTGCCAGA
  R
  GCCACTTGTG TCTGGGCAAG GTGCTTACGC ATATTTTACT TCCCGAACTT ACGTAGGGAC
  AGTGGATGAG GACGACGGTG ATTGAAAATT GGGCACCGGG GAGTTGGGGG ATTTTTGGTT
  GTTACAGCCT GTGTAGTTTA TAGTTTTGGG GTCTGGGAGT TCAGGCAGGA TCCATAACCC
  AAACTAGCCT TGCTCTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468177	MGP_WTSI_1_92950840	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258723915					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468177	MGP_WTSI_1_92950840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90981985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	535 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1201 bp downstream
Tssr8032	transcription start site region 8032	1071 bp downstream
Tssr8033	transcription start site region 8033	743 bp downstream
Tssr8034	transcription start site region 8034	731 bp downstream
Tssr8035	transcription start site region 8035	713 bp downstream
Tssr8036	transcription start site region 8036	701 bp downstream
Tssr8037	transcription start site region 8037	271 bp downstream
Tssr12924	transcription start site region 12924	1435 bp upstream
Tssr12925	transcription start site region 12925	1417 bp upstream
Tssr12926	transcription start site region 12926	1391 bp upstream
Tssr12927	transcription start site region 12927	1365 bp upstream
Tssr12928	transcription start site region 12928	1215 bp upstream
Tssr12929	transcription start site region 12929	413 bp upstream